SX No Homepage Pagination removes properly any homepage pagination (whatever plugin or function you are using) and redirects useless paginated content.
You have to be carefull : if you dont see pagination links on your homepage, it does not always mean that WordPress isnt adding it in the HTML header.
This plugin works on any default homepage.
If you want to contribute, check this link : https://bitbucket.org/rochdaniel/sx-no-homepage-pagination, or contact me on SeoMix
No configuration is necessary. Upload, activate and done.
No : just install it